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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14990913_14992782_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14990913 - 14992782
Intron Length:
1870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGCA
5'SS Class:
major
3'SS Sequence:
TGTGTGTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATACTT
Flanking Amino Acid:
VSLKTDLHVTDEKKPCPLCP
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
69.6
34.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.3
0.59
0.9
73.5
41.9
Minor 5ss
39.1
-1.2
3
50.7
45.7
Minor BPS
53.1
0.17
1.9
77.83
38.8

Associated Gene:

Gene:
TRMT1L
Ensembl Gene ID:
ENSAPLG00000008394
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026253
14986866 - 15007605
20740