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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14994087_14994605_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14994087 - 14994605
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TATTCTGAAACT
Flanking Amino Acid:
LVKPNLVGDQTFSKMGAHYH
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
88.2
0.86
0.7
83.7
30.9
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
54.5
0.22
2.3
80.6
41.6

Associated Gene:

Gene:
TRMT1L
Ensembl Gene ID:
ENSAPLG00000008394
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026253
14986866 - 15007605
20740
ENSAPLT00000019342
14987027 - 15008608
21582
ENSAPLT00000008739
14987198 - 15011375
24178