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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14994736_14996602_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14994736 - 14996602
Intron Length:
1867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTTCT
5'SS Class:
major
3'SS Sequence:
ACTTTCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCCGCACAATT
Flanking Amino Acid:
KGETESRFITAPAPKSSYQV
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
72.3
40.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
83.2
0.75
0.7
81.5
29.7
Minor 5ss
47
-0.3
2.9
68.1
42.9
Minor BPS
44.8
-0.3
2.1
66.59
44.2

Associated Gene:

Gene:
TRMT1L
Ensembl Gene ID:
ENSAPLG00000008394
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026253
14986866 - 15007605
20740
ENSAPLT00000019342
14987027 - 15008608
21582
ENSAPLT00000008739
14987198 - 15011375
24178