Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14996727_14997984_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14996727 - 14997984

Intron Length:

1258

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCCCCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

ATTTTCTCATCT

Flanking Amino Acid:

SYFNPKMKLNRQLIFCALAV

Intron Amino Acid Position:

227

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.8

76.5

26.8

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

83.9

0.76

0.6

78.2

30.7

Minor 5ss

24.3

-3

3.1

28.7

43.6

Minor BPS

61.9

0.45

1.8

82.4

38.9

Associated Gene:

Gene:

TRMT1L

Ensembl Gene ID:

ENSAPLG00000008394

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026253

14986866 - 15007605

20740

ENSAPLT00000019342

14987027 - 15008608

21582

ENSAPLT00000008739

14987198 - 15011375

24178