Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14998065_14998960_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14998065 - 14998960

Intron Length:

896

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAAGTCA

5'SS Class:

major

3'SS Sequence:

TATCTTTCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAC

U12 Branch Point Sequence:

TGTTTTGTCACG

Flanking Amino Acid:

IECLDAFGATGIMGLQWAKH

Intron Amino Acid Position:

254

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.7

0.54

64.4

35.9

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

76.6

0.6

0.8

36.1

Minor 5ss

36.5

-1.5

3.3

44.6

45.3

Minor BPS

45.5

-0.4

2.4

58.79

43.6

Associated Gene:

Gene:

TRMT1L

Ensembl Gene ID:

ENSAPLG00000008394

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026253

14986866 - 15007605

20740

ENSAPLT00000019342

14987027 - 15008608

21582

ENSAPLT00000008739

14987198 - 15011375

24178