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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14999208_15000775_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14999208 - 15000775
Intron Length:
1568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTCATTT
Flanking Amino Acid:
VIMHMRSFDFIHLDPFGTSV
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
27
Major BPS
100
1.24
0.5
100
0
Major PPT
85
0.79
0.8
82.2
34.1
Minor 5ss
41.1
-1
3.4
62.8
42
Minor BPS
50.3
0.09
1.8
70.99
41.1

Associated Gene:

Gene:
TRMT1L
Ensembl Gene ID:
ENSAPLG00000008394
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008739
14987198 - 15011375
24178
ENSAPLT00000026253
14986866 - 15007605
20740
ENSAPLT00000019342
14987027 - 15008608
21582