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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15000989_15002382_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
15000989 - 15002382
Intron Length:
1394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCTGTTA
5'SS Class:
weak_major
3'SS Sequence:
TCTTCCTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAG
U12 Branch Point Sequence:
TTCAGTACAATG
Flanking Amino Acid:
AARIVIAAVARAAARCNKGI
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.6
0.23
1.3
60.8
40.2
Major BPS
59.4
0.23
1.5
69.4
37.7
Major PPT
84.8
0.78
0.7
80.2
25
Minor 5ss
35.7
-1.6
3.4
48.1
47.4
Minor BPS
39.3
-0.9
2
44.72
42

Associated Gene:

Gene:
TRMT1L
Ensembl Gene ID:
ENSAPLG00000008394
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026253
14986866 - 15007605
20740
ENSAPLT00000019342
14987027 - 15008608
21582
ENSAPLT00000008739
14987198 - 15011375
24178