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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15002574_15003909_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15002574 - 15003909
Intron Length:
1336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATTTCAAAACA
Flanking Amino Acid:
IFQKEGNMVEENPYQQLPCD
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.4
34.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
84.8
0.78
0.8
81.1
30.9
Minor 5ss
34.4
-1.8
2.8
42.8
44
Minor BPS
56.5
0.2
1.9
73.15
38.5

Associated Gene:

Gene:
TRMT1L
Ensembl Gene ID:
ENSAPLG00000008394
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019342
14987027 - 15008608
21582
ENSAPLT00000008739
14987198 - 15011375
24178
ENSAPLT00000026253
14986866 - 15007605
20740