Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15004947_15006510_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15004947 - 15006510

Intron Length:

1564

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

AATTGTATTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

GGATCTTTAATT

Flanking Amino Acid:

THGPYDENKQEECGVYIKTP

Intron Amino Acid Position:

553

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.7

23.7

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

69.6

0.44

60.1

45.1

Minor 5ss

32.8

-2

2.9

39.7

45.8

Minor BPS

0.8

1.2

78.46

37.7

Associated Gene:

Gene:

TRMT1L

Ensembl Gene ID:

ENSAPLG00000008394

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019342

14987027 - 15008608

21582

ENSAPLT00000008739

14987198 - 15011375

24178