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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15007111_15007223_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15007111 - 15007223
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCCTTTTTAAAT
Flanking Amino Acid:
RHSIKGMNMPKLNKFLNYLS
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
76.2
39.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.7
0.76
0.8
81.3
35.7
Minor 5ss
38.4
-1.3
3.6
56.8
41.8
Minor BPS
66.4
0.59
1.4
75.95
41.3

Associated Gene:

Gene:
TRMT1L
Ensembl Gene ID:
ENSAPLG00000008394
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026253
14986866 - 15007605
20740
ENSAPLT00000019342
14987027 - 15008608
21582
ENSAPLT00000008739
14987198 - 15011375
24178