Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15013448_15013909_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15013448 - 15013909

Intron Length:

462

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTAGA

5'SS Class:

major

3'SS Sequence:

TGTTCTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTATCAG

U12 Branch Point Sequence:

CTTCTCTTTTCT

Flanking Amino Acid:

YIATANGQFTVLNGSFSLEL

Intron Amino Acid Position:

400

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

1.1

71.3

40.3

Major BPS

51.9

0.05

1.6

63.4

42.8

Major PPT

85.7

0.8

77.4

36.9

Minor 5ss

-1.4

2.8

52.3

44.3

Minor BPS

42.1

-0.5

3.6

72.84

Associated Gene:

Gene:

RNF2

Ensembl Gene ID:

ENSAPLG00000008212

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008522

15013346 - 15034585

21240