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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15015480_15016204_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15015480 - 15016204
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCAAT
5'SS Class:
strong_major
3'SS Sequence:
ATACTTACATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TTCTACATACTT
Flanking Amino Acid:
EEGLKIQAMNRLQRGKKQQI
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
78.1
38.2
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
66.7
0.38
1
64.8
40.4
Minor 5ss
40
-1.1
3.2
57
47.3
Minor BPS
49
0
2.1
73.61
43.4

Associated Gene:

Gene:
RNF2
Ensembl Gene ID:
ENSAPLG00000008212
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008522
15013346 - 15034585
21240