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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15016421_15017386_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15016421 - 15017386
Intron Length:
966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
TCCTCATGTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTTTCCTCATGT
Flanking Amino Acid:
ADCIITALRSGNKECPTCRK
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
69.6
36.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
69.2
0.43
0.9
61.8
39
Minor 5ss
38.4
-1.3
2.8
40.2
45.6
Minor BPS
51.9
0.14
2.1
75.91
46.6

Associated Gene:

Gene:
RNF2
Ensembl Gene ID:
ENSAPLG00000008212
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008522
15013346 - 15034585
21240