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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15017548_15017895_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15017548 - 15017895
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTACTTTATTT
Flanking Amino Acid:
SLYELQRTPQEAITDGLEIV
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
37.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72.2
0.5
1
67.3
43.4
Minor 5ss
33.7
-1.9
3.2
48
47.5
Minor BPS
67.5
0.63
1.6
84.37
36.8

Associated Gene:

Gene:
RNF2
Ensembl Gene ID:
ENSAPLG00000008212
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008522
15013346 - 15034585
21240