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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15057366_15100276_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15057366 - 15100276
Intron Length:
42911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGCCC
5'SS Class:
major
3'SS Sequence:
ATTTCTGCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TAATCTTTATTT
Flanking Amino Acid:
LDDSKCAYIRGKSEAVLKNF
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
64.9
37.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
80.9
0.7
0.9
78
35.8
Minor 5ss
30.6
-2.2
3.5
42.1
44.9
Minor BPS
65.4
0.56
1.5
77.84
38.8

Associated Gene:

Gene:
NIBAN1
Ensembl Gene ID:
ENSAPLG00000007350
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007682
15057311 - 15135133
77823