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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15100408_15101785_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15100408 - 15101785
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
ATTGTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTCATTTCAAAT
Flanking Amino Acid:
DSQSQFLKTKPKAEAGTVLY
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.1
40.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.6
0.76
0.8
77.6
36.1
Minor 5ss
28.4
-2.5
3.5
38.3
46.7
Minor BPS
47.8
-0
1.6
62.5
41.5

Associated Gene:

Gene:
NIBAN1
Ensembl Gene ID:
ENSAPLG00000007350
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007682
15057311 - 15135133
77823