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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15101918_15102591_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15101918 - 15102591
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTGATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TCTGTCTTGATT
Flanking Amino Acid:
YTVDCFETKEAYLKGLSPKY
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
74.7
36.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
81.8
0.71
0.9
72.8
41.9
Minor 5ss
45.8
-0.4
3
65.7
45.4
Minor BPS
66.1
0.59
1.4
77.73
39.7

Associated Gene:

Gene:
NIBAN1
Ensembl Gene ID:
ENSAPLG00000007350
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007682
15057311 - 15135133
77823