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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15104423_15119580_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15104423 - 15119580
Intron Length:
15158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAC
U12 Branch Point Sequence:
TTTGTACTACCT
Flanking Amino Acid:
LNDCVRHSNHDFLKQTTYEV
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
61.6
0.29
1.4
63.4
44
Major PPT
87.7
0.85
0.6
85.5
21.9
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
45.8
-0.2
2.2
73.17
43.7

Associated Gene:

Gene:
NIBAN1
Ensembl Gene ID:
ENSAPLG00000007350
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007682
15057311 - 15135133
77823