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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15119697_15125173_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15119697 - 15125173
Intron Length:
5477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
CATAACCATATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATGTCATAACC
Flanking Amino Acid:
WEMITGNEKEILSNLVMEEL
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
59.4
0.21
1
51.4
37.7
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
56.2
0.17
1.7
66.65
38.6

Associated Gene:

Gene:
NIBAN1
Ensembl Gene ID:
ENSAPLG00000007350
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007682
15057311 - 15135133
77823