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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15125536_15126513_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15125536 - 15126513
Intron Length:
978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATGCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
GTCGCCTAAAAT
Flanking Amino Acid:
SKNFLAGKIKATVSEPAQKC
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1.1
73.9
42.7
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
78.4
0.64
0.9
69.5
41.4
Minor 5ss
31.5
-2.1
2.4
34.7
41
Minor BPS
52
0.14
1.9
69.63
46.9

Associated Gene:

Gene:
NIBAN1
Ensembl Gene ID:
ENSAPLG00000007350
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007682
15057311 - 15135133
77823