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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15126702_15126952_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15126702 - 15126952
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
CACTGGAATGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTCCTCCACT
Flanking Amino Acid:
KTKDITKLKENVDQLMNLPF
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
59.3
0.21
1.1
51.1
41.6
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
70.4
0.72
2
92.41
36.6

Associated Gene:

Gene:
NIBAN1
Ensembl Gene ID:
ENSAPLG00000007350
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007682
15057311 - 15135133
77823