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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15129368_15129977_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15129368 - 15129977
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAACAT
U12 Branch Point Sequence:
CTGTCTTTAACA
Flanking Amino Acid:
IEKVKLRVLKQYDYDSSTIR
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
50.9
0.02
1.1
59
36.1
Major PPT
76.8
0.6
0.9
72.9
36.2
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
78.3
0.89
1.2
78.71
38.4

Associated Gene:

Gene:
NIBAN1
Ensembl Gene ID:
ENSAPLG00000007350
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007682
15057311 - 15135133
77823