About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15132006_15132902_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15132006 - 15132902
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTTTCCAAACC
Flanking Amino Acid:
YQTLLEETLKVIKEAAILKK
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
83.9
28.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
77.9
0.63
0.9
77.7
35.8
Minor 5ss
30.4
-2.2
3.2
39
46.4
Minor BPS
53.8
0.1
2
70.2
41.5

Associated Gene:

Gene:
NIBAN1
Ensembl Gene ID:
ENSAPLG00000007350
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007682
15057311 - 15135133
77823