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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1514319_1514482_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1514319 - 1514482
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCTTCTTCATT
Flanking Amino Acid:
EGYIYSHCRKVGITLFTVSH
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.5
33.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.7
0.65
0.8
78
29.7
Minor 5ss
41
-1
3
56.7
47.6
Minor BPS
66.4
0.6
1.7
82.74
39.5

Associated Gene:

Gene:
ABCD3
Ensembl Gene ID:
ENSAPLG00000009113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021119
1488199 - 1514667
26469
ENSAPLT00000009617
1495641 - 1515170
19530