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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15143287_15145842_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15143287 - 15145842
Intron Length:
2556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTCAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTATTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTGTTTTAAAT
Flanking Amino Acid:
SRGDVDDALGKFSLTLIDTL
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.3
84.6
33.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.1
0.77
0.7
80.4
31.4
Minor 5ss
38.8
-1.3
2.9
52.7
37.9
Minor BPS
62.7
0.48
1.5
75.95
41.3

Associated Gene:

Gene:
EDEM3
Ensembl Gene ID:
ENSAPLG00000007706
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008031
15139469 - 15165537
26069
ENSAPLT00000047952
15139469 - 15165537
26069