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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15152422_15152977_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15152422 - 15152977
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TACTGAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTACTGAATT
Flanking Amino Acid:
SLLAFFPGLQVLKGDIRPAI
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67.7
0.4
1
63.7
41.5
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
67.2
0.62
1.6
83.62
36.7

Associated Gene:

Gene:
EDEM3
Ensembl Gene ID:
ENSAPLG00000007706
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008031
15139469 - 15165537
26069