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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15152422_15154537_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15152422 - 15154537
Intron Length:
2116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TCTTGCATGATT
Flanking Amino Acid:
SLLAFFPGLQAFTTDFRVHW
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
85.5
0.8
0.7
84.4
23.4
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
51.9
0.14
2.1
75.68
41.6

Associated Gene:

Gene:
EDEM3
Ensembl Gene ID:
ENSAPLG00000007706
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047952
15139469 - 15165537
26069