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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15153062_15154537_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15153062 - 15154537
Intron Length:
1476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TCTTGCATGATT
Flanking Amino Acid:
VIKKHNFLPEAFTTDFRVHW
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.6
36.7
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
85.5
0.8
0.7
84.4
23.4
Minor 5ss
36.1
-1.6
3.3
45.9
49.3
Minor BPS
51.9
0.14
2.1
75.68
41.6

Associated Gene:

Gene:
EDEM3
Ensembl Gene ID:
ENSAPLG00000007706
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008031
15139469 - 15165537
26069