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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15174027_15179368_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15174027 - 15179368
Intron Length:
5342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
ATTTACAAAATA
Flanking Amino Acid:
FRMLDEKIEKGRDYCSEEED
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
48.7
-0.1
2.1
67.81
38.5

Associated Gene:

Gene:
C1orf21
Ensembl Gene ID:
ENSAPLG00000008136
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008438
15173254 - 15241115
67862