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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15179430_15183741_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15179430 - 15183741
Intron Length:
4312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGGTACTGATAC
Flanking Amino Acid:
IPGLVHQPRANMHISESQQE
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
84.5
0.78
0.8
81.1
30.9
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
44.5
-0.4
1.9
54.78
42.4

Associated Gene:

Gene:
C1orf21
Ensembl Gene ID:
ENSAPLG00000008136
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008438
15173254 - 15241115
67862