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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15183819_15216766_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15183819 - 15216766
Intron Length:
32948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GGTACCTCTACT
Flanking Amino Acid:
KIAARNQENLEKSASSNVRL
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.3
33.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
77.2
0.61
0.9
73.8
40.5
Minor 5ss
38.3
-1.3
3.4
54.5
43.9
Minor BPS
51.4
0.13
2
71.53
44.3

Associated Gene:

Gene:
C1orf21
Ensembl Gene ID:
ENSAPLG00000008136
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008438
15173254 - 15241115
67862