About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15216862_15241021_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15216862 - 15241021
Intron Length:
24160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGGTGCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
KNYQNGDVFGDEYRIKPVEE
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
70.8
0.47
1
68.5
42.1
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
C1orf21
Ensembl Gene ID:
ENSAPLG00000008136
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008438
15173254 - 15241115
67862