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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15361133_15364828_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15361133 - 15364828
Intron Length:
3696

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAA|GCCATGAAA
5'SS Class:
weak_major
3'SS Sequence:
TGCTGAACTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTTTGCTGAACT
Flanking Amino Acid:
MVPVPVDISLIPPFCIIHHV
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.8
0.18
1.3
56.5
41
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
66.9
0.38
1
55.9
43.7
Minor 5ss
18.4
-3.6
3.5
22.7
29.8
Minor BPS
72.4
0.78
1.9
93.08
35.2

Associated Gene:

Gene:
TSEN15
Ensembl Gene ID:
ENSAPLG00000008137
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043975
15361029 - 15367826
6798