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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15364955_15366212_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15364955 - 15366212
Intron Length:
1258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAA
5'SS Class:
strong_major
3'SS Sequence:
CAAACCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
ATCTCACTGATG
Flanking Amino Acid:
AFLVYLDLLEGRNWHEVKHV
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76.1
35
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
64.7
0.33
0.9
54.7
40.7
Minor 5ss
33.6
-1.9
2.9
41.3
45
Minor BPS
46.4
-0.4
2
54.67
40.6

Associated Gene:

Gene:
TSEN15
Ensembl Gene ID:
ENSAPLG00000008137
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043975
15361029 - 15367826
6798
ENSAPLT00000029747
15352578 - 15367826
15249
ENSAPLT00000008449
15355387 - 15367826
12440