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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15372004_15405684_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15372004 - 15405684
Intron Length:
33681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTT
Flanking Amino Acid:
LRYPKSRIALWAATDHNADN
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
66.2
39.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.6
0.84
0.7
81.3
36.3
Minor 5ss
29.7
-2.3
3.5
37.8
42.4
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
COLGALT2
Ensembl Gene ID:
ENSAPLG00000001376
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001482
15371753 - 15422173
50421