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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15405796_15407276_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15405796 - 15407276
Intron Length:
1481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CTTTCCTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ACTTTTTTGATT
Flanking Amino Acid:
DVEWRPMEDPQSYPEEIGPK
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.6
35.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.5
0.55
0.9
69.5
36.8
Minor 5ss
35.1
-1.7
2.8
49.5
40.3
Minor BPS
66.5
0.6
1.1
75.74
35.5

Associated Gene:

Gene:
COLGALT2
Ensembl Gene ID:
ENSAPLG00000001376
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001482
15371753 - 15422173
50421