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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15407395_15408170_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15407395 - 15408170
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATACA
5'SS Class:
major
3'SS Sequence:
CCCTCTTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTAATAACAATT
Flanking Amino Acid:
AREKWSDYILFVDTDNLLTN
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
75.7
33.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
78
0.63
0.7
76.5
25.6
Minor 5ss
35.5
-1.6
2.7
40.3
40.5
Minor BPS
40.5
-0.6
1.9
55.81
40.1

Associated Gene:

Gene:
COLGALT2
Ensembl Gene ID:
ENSAPLG00000001376
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001482
15371753 - 15422173
50421