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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15408306_15412017_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15408306 - 15412017
Intron Length:
3712

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTGTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCTCTTGTAACA
Flanking Amino Acid:
SNFWCGITPQGYYKRTLDYP
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.9
1.15
0.7
87.7
28.5
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
80
0.68
0.9
73.4
41.3
Minor 5ss
22.7
-3.1
3.9
33.8
42.3
Minor BPS
52.7
0.08
2
67.58
39.4

Associated Gene:

Gene:
COLGALT2
Ensembl Gene ID:
ENSAPLG00000001376
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001482
15371753 - 15422173
50421