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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15416652_15417122_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15416652 - 15417122
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TCCTCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATACAT
U12 Branch Point Sequence:
TCCTCTCTTACA
Flanking Amino Acid:
NFVHTLIEAMIDRPPIEPSQ
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.1
34.3
Major BPS
62.6
0.31
1.1
70.6
34.3
Major PPT
85.1
0.79
0.7
79.4
26.3
Minor 5ss
41.8
-0.9
2.8
49.1
41.3
Minor BPS
49.5
-0
2
63.56
42.8

Associated Gene:

Gene:
COLGALT2
Ensembl Gene ID:
ENSAPLG00000001376
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001482
15371753 - 15422173
50421