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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15417200_15418812_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15417200 - 15418812
Intron Length:
1613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCAACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTCTCTTCAACC
Flanking Amino Acid:
KHPDKMGFDEIFMINLKRRK
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
81.8
29.7
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
66.1
0.36
0.9
59.2
35.9
Minor 5ss
39.7
-1.1
3.1
53.3
37.6
Minor BPS
71.2
0.65
1.5
78.34
37.6

Associated Gene:

Gene:
COLGALT2
Ensembl Gene ID:
ENSAPLG00000001376
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001482
15371753 - 15422173
50421