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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15418920_15419732_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15418920 - 15419732
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
AVKIVEAVDGKALNTSQLKA
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
81.1
26.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.8
0.83
0.7
80.1
31.9
Minor 5ss
41
-1
2.9
52.8
38.5
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
COLGALT2
Ensembl Gene ID:
ENSAPLG00000001376
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001482
15371753 - 15422173
50421