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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15419866_15420480_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15419866 - 15420480
Intron Length:
615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
ATTTCAGTACCC
Flanking Amino Acid:
FLSHYYIWKEVVNRELEKTL
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
73
0.57
1.2
74
41.2
Major PPT
82
0.72
0.8
79.6
32.4
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
47.7
-0.1
2.4
69.86
41.5

Associated Gene:

Gene:
COLGALT2
Ensembl Gene ID:
ENSAPLG00000001376
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001482
15371753 - 15422173
50421