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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15420609_15421249_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15420609 - 15421249
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCACCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACC
Flanking Amino Acid:
IEEAQLDWELIYIGRKRMQV
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.8
0.69
0.8
77.3
31.3
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
61.4
0.34
1.7
74.92
35.8

Associated Gene:

Gene:
COLGALT2
Ensembl Gene ID:
ENSAPLG00000001376
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001482
15371753 - 15422173
50421