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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15421457_15421896_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15421457 - 15421896
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
CTTCCCCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTTCCCCATTT
Flanking Amino Acid:
FLPVMYNKHPVAKYMEYYES
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
65.7
45.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
72.7
0.51
0.8
70.6
29.3
Minor 5ss
37.1
-1.5
2.8
43.3
43.7
Minor BPS
48.4
-0
2.1
72.84
44.3

Associated Gene:

Gene:
COLGALT2
Ensembl Gene ID:
ENSAPLG00000001376
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001482
15371753 - 15422173
50421