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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15429607_15430212_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15429607 - 15430212
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CACACCTTCACA
Flanking Amino Acid:
ELVQVISEDKELVIPDSANV
Intron Amino Acid Position:
854

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.6
42.7
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
87.4
0.84
0.7
83
25.5
Minor 5ss
30.2
-2.3
3.3
38.2
47
Minor BPS
53.7
0.11
1.9
60.95
44.9

Associated Gene:

Gene:
RGL1
Ensembl Gene ID:
ENSAPLG00000015888
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016611
15429174 - 15503718
74545