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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15430328_15431482_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15430328 - 15431482
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAGT
5'SS Class:
major
3'SS Sequence:
TCTATTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTACAA
Flanking Amino Acid:
NNGNMYKSIMLTSQDKTPAV
Intron Amino Acid Position:
816

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
70.5
41.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87.9
0.85
0.8
80.4
37.1
Minor 5ss
35.8
-1.6
3
45.5
44.6
Minor BPS
53.1
0.09
2
69.75
42.3

Associated Gene:

Gene:
RGL1
Ensembl Gene ID:
ENSAPLG00000015888
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016611
15429174 - 15503718
74545