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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15431738_15432974_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15431738 - 15432974
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTCC
5'SS Class:
major
3'SS Sequence:
TTCTGTTGTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TTCTGTTGTACA
Flanking Amino Acid:
IDTPDEPQKKLSESSSSCSS
Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
61
38.8
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
80.3
0.68
0.9
75.5
38.4
Minor 5ss
36.3
-1.6
3.5
51
45.8
Minor BPS
46.5
-0.2
2.2
63.46
42.9

Associated Gene:

Gene:
RGL1
Ensembl Gene ID:
ENSAPLG00000015888
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016611
15429174 - 15503718
74545