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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15433162_15435137_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15433162 - 15435137
Intron Length:
1976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TCTTCTATACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TCTTCTATACTA
Flanking Amino Acid:
PRKSMVKRLSLLFLGSEVIT
Intron Amino Acid Position:
668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
73.2
0.52
0.9
67.7
37.6
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
52.2
0.07
1.9
67.44
39.9

Associated Gene:

Gene:
RGL1
Ensembl Gene ID:
ENSAPLG00000015888
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016611
15429174 - 15503718
74545