About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15436284_15437784_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15436284 - 15437784
Intron Length:
1501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTTTTCTAAATA
Flanking Amino Acid:
GLINFEKRRREFEVIAQIKL
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
38.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.8
0.63
0.8
73.4
36.7
Minor 5ss
39.1
-1.2
2.8
40.9
45.4
Minor BPS
66.4
0.51
1.6
75.34
36.5

Associated Gene:

Gene:
RGL1
Ensembl Gene ID:
ENSAPLG00000015888
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016611
15429174 - 15503718
74545