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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15439014_15441288_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15439014 - 15441288
Intron Length:
2275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCGTCTG
5'SS Class:
major
3'SS Sequence:
TGATCATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
TTGCTCTGATCA
Flanking Amino Acid:
QRRLQLQKDMGVMQGTVPYL
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
61.6
44.4
Major BPS
73
0.57
1.2
74
41.2
Major PPT
75.9
0.58
1
66.4
44
Minor 5ss
31.5
-2.1
3.2
37.3
41.5
Minor BPS
51.1
0.03
1.7
65.37
40.9

Associated Gene:

Gene:
RGL1
Ensembl Gene ID:
ENSAPLG00000015888
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016611
15429174 - 15503718
74545